Index A | B | C | F | G | I | N | O | P | R | S | T | V | W A add_zif_atoms() (chic.Net method) add_zif_atoms_legacy() (chic.Net method) append_lammps_trajectory() (chic.Structure method) assign_beads() (chic.atomic_cluster.AtomicCluster method) assign_mofff_topology() (chic.Net method) atom_to_bead_index (chic.atomic_cluster.AtomicCluster property) atomic_clusters (chic.Structure property) AtomicCluster (class in chic.atomic_cluster) B bead_ids (chic.atomic_cluster.AtomicCluster property) beads_frac_coords (chic.atomic_cluster.AtomicCluster property) beads_images (chic.atomic_cluster.AtomicCluster property) C cart_coords (chic.atomic_cluster.AtomicCluster property) check_closest_approach() (chic.Net method) check_need_for_supercell() (chic.Net method) coordination_number (chic.atomic_cluster.AtomicCluster property) F find_metal_clusters() (chic.Structure method) find_rings() (chic.atomic_cluster.AtomicCluster method) from_ase_atoms() (chic.Structure class method) from_cif() (chic.Structure class method) from_lammps_data() (chic.Structure class method) from_structure() (chic.Net class method) (chic.Structure class method) from_topocif() (chic.Net class method) G get_beads() (chic.Structure method) get_cart_coords_by_species() (chic.atomic_cluster.AtomicCluster method) get_centroid() (chic.atomic_cluster.AtomicCluster method) get_image_by_site_index() (chic.atomic_cluster.AtomicCluster method) get_indices_by_species() (chic.atomic_cluster.AtomicCluster method) get_neighbours_by_cutoff() (chic.Structure method) graph (chic.atomic_cluster.AtomicCluster property) I internal_bead_bonds (chic.atomic_cluster.AtomicCluster property) N neighbour_list (chic.Structure property) Net (class in chic) net_to() (chic.Structure method) net_to_ase_atoms() (chic.Structure method) net_to_ase_to() (chic.Structure method) net_to_cif() (chic.Structure method) net_to_extxyz() (chic.Structure method) net_to_gulp_framework_nodes() (chic.Structure method) net_to_lammps_data() (chic.Structure method) net_to_lammps_dump() (chic.Structure method) net_to_struct() (chic.Structure method) O overlay_cg_atomistic_representations() (chic.Structure method) P pickle_neighbourlist() (chic.Structure method) R register_methods() (chic.Structure method) remove_sites_by_symbol() (chic.Structure method) replicate() (chic.Net method) rescale() (chic.Net method) reset_decoration() (chic.Net method) S site_indices (chic.atomic_cluster.AtomicCluster property) skip (chic.atomic_cluster.AtomicCluster property) species (chic.atomic_cluster.AtomicCluster property) Structure (class in chic) T tidy() (chic.Structure method) to_ase() (chic.Structure method) to_ase_atoms() (chic.Net method) to_ase_to() (chic.Net method) to_lammps_data() (chic.Net method) to_molecule() (chic.atomic_cluster.AtomicCluster method) to_net() (chic.Structure method) V visualise() (chic.atomic_cluster.AtomicCluster method) W with_updated_coordinates_and_images() (chic.atomic_cluster.AtomicCluster class method)